# Workflow

## Daily Use

Initialize local state:

```bash
make init
```

Check paths:

```bash
make doctor
```

Run one local Track 1 simulation through the in-repo runner:

```bash
make track1-sim-smoke
```

Submit a Figure 1 treatment:

```bash
make submit-figure1-m10
```

Run jobs:

```bash
make run-loop
```

Collate completed results:

```bash
make collate-figure1
```

Inspect current status:

```bash
make status
```

Review the currently available empirical outputs:

```text
docs/RESULTS_IN_HAND.md
```

## Current Assumption

The Makefile now drives the local orchestration code in `renunney`, while the
Track 1 runner/API boundary, analysis layer, threshold/search layer, and
simulation kernel, report generator, and extinction-model data layer are also
local to `renunney`, and the dataset generator and fit layer are now local as
well. The paper-scale Figure 1 configs used for submission are now local to
`renunney/config`.