PYTHON := python3
REPO_ROOT := $(abspath .)
LEGACY_ROOT := $(REPO_ROOT)/../collaborations/to_ptbc/evc/cost_of_substitution
ORCH := $(REPO_ROOT)/scripts/run_orchestration.py

DB := $(REPO_ROOT)/runs/state/cos-orch.sqlite
RESULT_ROOT := $(REPO_ROOT)/runs/results
SCRATCH_ROOT := $(REPO_ROOT)/runs/scratch

FIG1_M005 := $(LEGACY_ROOT)/examples/track1_figure1_paper_M_0_05.json
FIG1_M025 := $(LEGACY_ROOT)/examples/track1_figure1_paper_M_0_25.json
FIG1_M05 := $(LEGACY_ROOT)/examples/track1_figure1_paper_M_0_5.json
FIG1_M10 := $(LEGACY_ROOT)/examples/track1_figure1_paper_M_1_0.json
FIG1_M100 := $(LEGACY_ROOT)/examples/track1_figure1_paper_M_10_0.json

.PHONY: help init doctor list-jobs run-one run-loop run-loop-one collate-figure1 \
 submit-figure1-m005 submit-figure1-m025 submit-figure1-m05 submit-figure1-m10 submit-figure1-m100 \
 submit-all-figure1 status results-tree

help:
	@echo "Targets:"
	@echo "  init                Create run directories and initialize the SQLite registry"
	@echo "  doctor              Show key paths and verify local orchestration and legacy backend paths"
	@echo "  list-jobs           List jobs in the local registry"
	@echo "  run-one             Claim and run one queued job"
	@echo "  run-loop            Run worker loop until queue empty"
	@echo "  run-loop-one        Run exactly one queued job through the worker loop"
	@echo "  collate-figure1     Collate completed Track 1 Figure 1 jobs"
	@echo "  submit-figure1-m005 Submit Figure 1 paper-scale jobs for M=0.05"
	@echo "  submit-figure1-m025 Submit Figure 1 paper-scale jobs for M=0.25"
	@echo "  submit-figure1-m05  Submit Figure 1 paper-scale jobs for M=0.5"
	@echo "  submit-figure1-m10  Submit Figure 1 paper-scale jobs for M=1.0"
	@echo "  submit-figure1-m100 Submit Figure 1 paper-scale jobs for M=10.0"
	@echo "  submit-all-figure1  Submit all paper-scale Figure 1 treatments"
	@echo "  status              Show job status and current result tree"
	@echo "  results-tree        List the current result files"

init:
	mkdir -p $(REPO_ROOT)/runs/state $(REPO_ROOT)/runs/results $(REPO_ROOT)/runs/scratch
	$(PYTHON) $(ORCH) init-db --db $(DB)

doctor:
	@echo "REPO_ROOT=$(REPO_ROOT)"
	@echo "LEGACY_ROOT=$(LEGACY_ROOT)"
	@echo "ORCH=$(ORCH)"
	@echo "DB=$(DB)"
	@echo "RESULT_ROOT=$(RESULT_ROOT)"
	@echo "SCRATCH_ROOT=$(SCRATCH_ROOT)"
	test -f $(ORCH)
	test -d $(LEGACY_ROOT)/python

list-jobs:
	$(PYTHON) $(ORCH) list --db $(DB)

run-one:
	$(PYTHON) $(ORCH) run-one --db $(DB) --result-root $(RESULT_ROOT) --scratch-root $(SCRATCH_ROOT)

run-loop:
	$(PYTHON) $(ORCH) run-loop --db $(DB) --result-root $(RESULT_ROOT) --scratch-root $(SCRATCH_ROOT)

run-loop-one:
	$(PYTHON) $(ORCH) run-loop --db $(DB) --result-root $(RESULT_ROOT) --scratch-root $(SCRATCH_ROOT) --max-jobs 1

collate-figure1:
	$(PYTHON) $(ORCH) collate-figure1 --db $(DB) --output $(RESULT_ROOT)/figure1-collated.json

submit-figure1-m005:
	$(PYTHON) $(ORCH) submit-figure1 --db $(DB) --config $(FIG1_M005) --job-prefix fig1-m005 --created-by make

submit-figure1-m025:
	$(PYTHON) $(ORCH) submit-figure1 --db $(DB) --config $(FIG1_M025) --job-prefix fig1-m025 --created-by make

submit-figure1-m05:
	$(PYTHON) $(ORCH) submit-figure1 --db $(DB) --config $(FIG1_M05) --job-prefix fig1-m05 --created-by make

submit-figure1-m10:
	$(PYTHON) $(ORCH) submit-figure1 --db $(DB) --config $(FIG1_M10) --job-prefix fig1-m10 --created-by make

submit-figure1-m100:
	$(PYTHON) $(ORCH) submit-figure1 --db $(DB) --config $(FIG1_M100) --job-prefix fig1-m100 --created-by make

submit-all-figure1: submit-figure1-m005 submit-figure1-m025 submit-figure1-m05 submit-figure1-m10 submit-figure1-m100

results-tree:
	find $(RESULT_ROOT) -maxdepth 4 -type f | sort

status:
	@echo "Jobs:"
	$(PYTHON) $(ORCH) list --db $(DB)
	@echo
	@echo "Results:"
	find $(RESULT_ROOT) -maxdepth 4 -type f | sort || true