renunney

Clean working repository for:

• faithful replication of Leonard Nunney's 2003 cost-of-substitution results,
• orchestration of distributed sweep runs,
• later migration to a faster Rust-backed worker.

Current Scope

This repository is the clean operational wrapper around the current work in:

• ../collaborations/to_ptbc/evc/cost_of_substitution

The Track 1 simulation backend still lives there. The orchestration control plane and the Track 1 runner/API boundary are now local to renunney.

renunney provides:

• a clean git repo,
• a stable working directory layout,
• a local orchestration CLI and library,
• local paper-scale Figure 1 submission configs,
• a local Track 1 runner and config/API layer,
• a local Track 1 analysis layer for tracking summaries and loci-regression,
• a local Track 1 threshold/search layer for Nunney-style threshold checks,
• a local Track 1 simulation kernel,
• a Makefile for common tasks,
• migration notes for pulling code into this repo in stages.

Layout

• docs/
  • project and migration notes
• config/
  • configuration templates and examples
• runs/state/
  • SQLite registries and persistent orchestration state
• runs/results/
  • result artifacts collected by orchestration
• runs/scratch/
  • local worker scratch and cache files
• src/renunney/
  • future in-repo Python package and migration target
• scripts/
  • local CLI entrypoints
• tests/
  • local verification for migrated boundaries

Start

Initialize the local run directories and SQLite registry:

make init

Submit a paper-scale Figure 1 treatment:

make submit-figure1-m10

Run one local Track 1 simulation through the migrated runner/API boundary:

make track1-sim-smoke

Run one worker loop locally:

make run-loop

Collate completed Figure 1 jobs:

make collate-figure1

Status

The current state is split:

• orchestration control plane: local to renunney
• Track 1 runner and config/API layer: local to renunney
• Track 1 analysis layer: local to renunney
• Track 1 threshold/search layer: local to renunney
• Track 1 simulation kernel: local to renunney
• Track 1 report, dataset, fit, and extinction-model helpers: still imported from the older cost_of_substitution directory through the local compatibility layer

This repo is now the clean operational entry point while the simulation code is migrated in later stages.