Starting at _dev/avida-notebook/AvidaResourceNotebook git clone https://github.com/ruppmatt/AvidaResourceNotebook.git cd AvidaResourceNotebook && git clone https://github.com/devosoft/avida && cd avida && ./build_avida && cd .. && virtualenv -p `which python3` venv && . venv/bin/activate && pip install -r requirements.txt && ln -s ../avida/cbuild/work/avida default_config/avida && cd default_config && ./avida && cd .. in ~/_dev/avida-notebook/avidaResourceNotebook git submodule init && git submodule update ------- or all at once git clone https://github.com/ruppmatt/AvidaResourceNotebook && cd AvidaResourceNotebook && git clone https://github.com/devosoft/avida && cd avida && ./build_avida && cd .. && virtualenv -p `which python3` venv && . venv/bin/activate && pip install -r requirements.txt && ln -s ../avida/cbuild/work/avida default_config/avida && cd default_config && ./avida && cd .. then in ~/_dev/avida-notebook/avidaResourceNotebook ~/_dev/avida-notebook/avidaResourceNotebook At that point you can launch the notebook by: jupyter notebook -------------------------------- git clone https://github.com/devosoft/avida.git cd avida git checkout AvidaED-Web git submodule init git submodule update ———————————————————————————————————————————————————— VIM ———————————————————————————————————————————————————— vim filename to open vim with a certain file. [esc]i to insert [escape] to leaven insert mode [shift]:wq to have command prompt; write; quit ———————————————————————————————————————————————————— command prompt ———————————————————————————————————————————————————— md5 build_avida to get hash number pwr to get what folder one is in cd to change folder to home or root cat to concatenate files, but just list one then it gives a listing ls to get a folder listing ls -alh listing with all files; long version; human readable file size ls -lh long version; including where a soft link goes nameOfExecutableFile --version to get a version number which nameOfFile mv move to change the file or folder name. && to put more than one command on the same line. if one command fails it does not do the next command & to something in background as a batch can use | to redirect stuff to another program 3 streams = input stream, output stream and error stream ln creates a soft link -s means soft ln -s ~/_dev/avida/cbuild/work/ av_ui file/dir soft link points to nothing if file deleted. hard link still retains the block. if there are any hard links to a file it still exists, bust with one fewer names soft link does not retain the file if the file is deleted (file exists as long as there is the original name or a hard link The original name is a hard link sort of man ls gives you the manual for ls = man works for many other commands. q to quit out of man less and more work the same way and show you part of a file. ———————————————————————————————————————————————————— Off Topic ———————————————————————————————————————————————————— ———————————————————————————————————————————————————— Genetics ———————————————————————————————————————————————————— Greta Kaplan I've never seen this dog: If I've read the thread right the dog is reported to be Bb KyKy ataw EmE DD. Bb - the base color is black rather than liver and should have black nose, toe pads and nails unless there is white spotting of some form which is not included above. Greta's description as black tricolor - indicates she is a black and tan with white which is consistent with B-kykyat-E-D-. KyKy - allows expression at the A loci and is NOT brindle. At indicates tan points. The Aw indicates wild type. Generally in the Agouti series Ay > Aw > at > a If the dog looks like a blacktri, then I'd question the aw, typically a black-tri would be atat or ata Em - indicates a mask, E is just normal extension = dog can produce both types of pigment there is a lot of variation in masks DD - no dilution