ReNunney/docs/WORKFLOW.md

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# Workflow
## Daily Use
Initialize local state:
```bash
make init
```
Check paths:
```bash
make doctor
```
Run one local Track 1 simulation through the in-repo runner:
```bash
make track1-sim-smoke
```
Submit a Figure 1 treatment:
```bash
make submit-figure1-m10
```
Run jobs:
```bash
make run-loop
```
Collate completed results:
```bash
make collate-figure1
```
Inspect current status:
```bash
make status
```
## Current Assumption
The Makefile now drives the local orchestration code in `renunney`, while the
Track 1 runner/API boundary, analysis layer, threshold/search layer, and
simulation kernel and report generator are also local to `renunney`. The
remaining Track 1 dataset/fit helpers are still imported from the legacy
`cost_of_substitution` directory through the compatibility layer in
`src/renunney/legacy.py`. The paper-scale Figure 1 configs used for submission
are now local to `renunney/config`.