ReNunney/docs/WORKFLOW.md

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# Workflow
## Daily Use
Initialize local state:
```bash
make init
```
Check paths:
```bash
make doctor
```
Run one local Track 1 simulation through the in-repo runner:
```bash
make track1-sim-smoke
```
Submit a Figure 1 treatment:
```bash
make submit-figure1-m10
```
Run jobs:
```bash
make run-loop
```
Collate completed results:
```bash
make collate-figure1
```
Inspect current status:
```bash
make status
```
Review the currently available empirical outputs:
```text
docs/RESULTS_IN_HAND.md
```
## Current Assumption
The Makefile now drives the local orchestration code in `renunney`, while the
Track 1 runner/API boundary, analysis layer, threshold/search layer, and
simulation kernel, report generator, and extinction-model data layer are also
local to `renunney`, and the dataset generator and fit layer are now local as
well. The paper-scale Figure 1 configs used for submission are now local to
`renunney/config`.